If the floor is really bad then replace the quarter, if its just a small section then cut that piece out and replace.
Normally a replacement floor section comes with the inner sill section as part of it. You can utilise this or like previously mentioned change the whole inner sill section.
The reason why i would go for the inner and outer sill combination is the ease of it more than anything else. This way you can install the whole assembly in one shot rather than messing around doing one at a time. When the assembly is in then you can do the door step without having to mess around with any bracing.
The big problem with replacing a complete inner sill is the inner sill stiffener in the companion bin as access there is very tight.
It is possible but very awkward.
Also there is the price, you can buy the outer sill and inner section cheaper and then go that way if money is tight or make your own inner sill. You will need a new jacking point as well.
The other issue with oversills are they are not as structurally strong as a standard 4.5" sill plus unless you cut some drain holes in them moisture can build up staring the corrosion process all over again. There have been many many discussions about the merits of oversills on this forum so at the end of the day its entirely your choice what you want to fit to your car but listen to the many people who advise against using them, they are not saying it for the hell of it.
Both Irostoke's pictures and the pictures in the Project Erm link show you quite clearly how to go about doing the job, utilise them that's what they are there for and any questions ask away.
Start a thread in the complete mini rebuild section and keep updating it that way it flows better than keep adding individual threads.
Edited by sonikk4, 17 June 2011 - 07:56 PM.